Separable Image Warping with Spatial Lookup Tables

Image warping refers to the 2-D resampling of a source image onto a target image. In the general case, this requires costly 2-D filtering operations. Simplifications are possible when the warp can be expressed as a cascade of orthogonall-D transformations. In these cases, separable transformations have been introduced to realize large performance gains. The central ideas in this area were formulated in the 2-pass algorithm by Catmull and Smith. Although that method applies over an important class of transformations, there are intrinsic problems which limit its usefulness. The goal of this work is to extend the 2-pass approach to handle arbitrary spatial mapping functions. We address the difficulties intrinsic to 2-pass scanline algorithms: bottlenecking, foldovers, and the lack of closed-form inverse solutions. These problems are shown to be resolved in a general, efficient, separable technique, with graceful degradation for transformations of increasing complexity

A Review of Object Detection Models based on Convolutional Neural Network

Convolutional Neural Network (CNN) has become the state-of-the-art for object detection in image task. In this chapter, we have explained different state-of-the-art CNN based object detection models. We have made this review with categorization those detection models according to two different approaches: two-stage approach and one-stage approach. Through this chapter, it has shown advancements in object detection models from R-CNN to latest RefineDet. It has also discussed the model description and training details of each model. Here, we have also drawn a comparison among those models.Comment: 17 pages, 11 figures, 1 tabl

Rich interaction and feedback supported mammographic training: A trial of an augmented reality approach

The conventional ‘keyboard and workstation’ approach allows complex medical image presentation and manipulation during mammographic interpretation. Nevertheless, providing rich interaction and feedback in real time for navigational training or computer assisted detection of disease remains a challenge. Through computer vision and state of the art AR (Augmented Reality) technique, this study proposes an ‘AR mammographic workstation’ approach which could support workstation-independent rich interaction and real-time feedback. This flexible AR approach explores the feasibility of facilitating various mammographic training scenes via AR as well as its limitations

Quantitative Comparison of Sinc-Approximating Kernels for Medical Image Interpolation

Abstract. Interpolation is required in many medical image processing operations. From sampling theory, it follows that the ideal interpolation kernel is the sinc function, which is of infinite extent. In the attempt to obtain practical and computationally efficient image processing al-gorithms, many sinc-approximating interpolation kernels have been de-vised. In this paper we present the results of a quantitative comparison of 84 different sinc-approximating kernels, with spatial extents ranging from 2 to 10 grid points in each dimension. The evaluation involves the application of geometrical transformations to medical images from dif-ferent modalities (CT, MR, and PET), using the different kernels. The results show very clearly that, of all kernels with a spatial extent of 2 grid points, the linear interpolation kernel performs best. Of all kernels with an extent of 4 grid points, the cubic convolution kernel is the best (28 %- 75 % reduction of the errors as compared to linear interpolation). Even better results (44 %- 95 % reduction) are obtained with kernels of larger extent, notably the Welch, Cosine, Lanczos, and Kaiser windowed sinc kernels. In general, the truncated sinc kernel is one of the worst performing kernels.

Superimposition of eye fundus images for longitudinal analysis from large public health databases

In this paper, a method is presented for superimposition (i.e. registration) of eye fundus images from persons with diabetes screened over many years for diabetic retinopathy. The method is fully automatic and robust to camera changes and colour variations across the images both in space and time. All the stages of the process are designed for longitudinal analysis of cohort public health databases where retinal examinations are made at approximately yearly intervals. The method relies on a model correcting two radial distortions and an affine transformation between pairs of images which is robustly fitted on salient points. Each stage involves linear estimators followed by non-linear optimisation. The model of image warping is also invertible for fast computation. The method has been validated (1) on a simulated montage and (2) on public health databases with 69 patients with high quality images (271 pairs acquired mostly with different types of camera and 268 pairs acquired mostly with the same type of camera) with success rates of 92% and 98%, and five patients (20 pairs) with low quality images with a success rate of 100%. Compared to two state-of-the-art methods, ours gives better results.Comment: This is an author-created, un-copyedited version of an article published in Biomedical Physics \& Engineering Express. IOP Publishing Ltd is not responsible for any errors or omissions in this version of the manuscript or any version derived from it. The Version of Record is available online at https://doi.org/10.1088/2057-1976/aa7d1

Cystamine Preparations Exhibit Anticoagulant Activity

Transglutaminases are a superfamily of isoenzymes found in cells and plasma. These enzymes catalyze the formation of ε-N-(γ-glutamyl)-lysyl crosslinks between proteins. Cystamine blocks transglutaminase activity and is used in vitro in human samples and in vivo in mice and rats in studies of coagulation, immune dysfunction, and inflammatory disease. These studies have suggested cystamine blocks fibrin crosslinking and has anti-inflammatory effects, implicating transglutaminase activity in the pathogenesis of several diseases. We measured the effects of cystamine on fibrin crosslinking, tissue factor-triggered plasma clot formation and thrombin generation, and coagulation factor enzymatic activity. At concentrations that blocked fibrin crosslinking, cystamine also inhibited plasma clot formation and reduced thrombin generation. Cystamine inhibited the amidolytic activity of coagulation factor XI and thrombin towards chromogenic substrates. These findings demonstrate that cystamine exhibits anticoagulant activity during coagulation. Given the close relationship between coagulation and inflammation, these findings suggest prior studies that used cystamine to implicate transglutaminase activity in disease pathogenesis warrant re-examination

Elevated tissue factor expression contributes to exacerbated diabetic nephropathy in mice lacking eNOS fed a high fat diet: Tissue factor and diabetic nephropathy

Human eNOS (NOS3) polymorphisms that lower its expression are associated with advanced diabetic nephropathy (DN), and the lack of eNOS accelerates DN in diabetic mice. Diabetes is associated with fibrin deposition. Lack of nitric oxide and fatty acids stimulate the NF-kB pathway, which increases tissue factor (TF)

Elevated Prothrombin Promotes Venous, but Not Arterial, Thrombosis in Mice

Individuals with elevated prothrombin, including those with the prothrombin G20210A mutation, have increased risk of venous thrombosis. Although these individuals do not have increased circulating prothrombotic biomarkers, their plasma demonstrates increased tissue factor-dependent thrombin generation in vitro. The objectives of this study were to determine the pathologic role of elevated prothrombin in venous and arterial thrombosis in vivo, and distinguish thrombogenic mechanisms in these vessels

InterFace : A software package for face image warping, averaging, and principal components analysis

We describe InterFace, a software package for research in face recognition. The package supports image warping, reshaping, averaging of multiple face images, and morphing between faces. It also supports principal components analysis (PCA) of face images, along with tools for exploring the “face space” produced by PCA. The package uses a simple graphical user interface, allowing users to perform these sophisticated image manipulations without any need for programming knowledge. The program is available for download in the form of an app, which requires that users also have access to the (freely available) MATLAB Runtime environment

Quantifying uncertainty, variability and likelihood for ordinary differential equation models

<p>Abstract</p> <p>Background</p> <p>In many applications, ordinary differential equation (ODE) models are subject to uncertainty or variability in initial conditions and parameters. Both, uncertainty and variability can be quantified in terms of a probability density function on the state and parameter space.</p> <p>Results</p> <p>The partial differential equation that describes the evolution of this probability density function has a form that is particularly amenable to application of the well-known method of characteristics. The value of the density at some point in time is directly accessible by the solution of the original ODE extended by a single extra dimension (for the value of the density). This leads to simple methods for studying uncertainty, variability and likelihood, with significant advantages over more traditional Monte Carlo and related approaches especially when studying regions with low probability.</p> <p>Conclusions</p> <p>While such approaches based on the method of characteristics are common practice in other disciplines, their advantages for the study of biological systems have so far remained unrecognized. Several examples illustrate performance and accuracy of the approach and its limitations.</p